Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12574402 chr11:123530134 A/G 1.65E-6 502 31.83 29.37 24.67 KM Plot
THCA rs12575613 chr11:123526649 G/A 2.84E-5 498 31.87 28.33 26.73 KM Plot
THCA rs12577081 chr11:123531288 A/G 1.64E-6 503 24.67 29.37 31.78 KM Plot
THCA rs1259424 chr12:31745607 A/C 7.15E-6 498 31.7 31.58 17.13 KM Plot
THCA rs1259425 chr12:31747671 C/G 5.73E-5 503 17.13 31.43 31.67 KM Plot
THCA rs12608395 chr18:13821686 C/G 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs12608421 chr18:13821919 A/G 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs12608423 chr18:13821893 C/A 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs12608439 chr18:13821983 C/T 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs12633353 chr3:63970280 T/C 2.19E-9 491 31.72 31.8 25.1 KM Plot
THCA rs12658342 chr5:178218032 G/A 3.23E-5 499 31.47 34.4 24.9 KM Plot
THCA rs12666104 chr7:16460488 G/C 3.5E-5 495 31.37 32.6 33.48 KM Plot
THCA rs12666794 chr7:32788774 G/T 9.65E-5 501 31.45 31.67 31.97 KM Plot
THCA rs12666839 chr7:32789063 G/C 9.81E-5 502 31.47 31.47 31.97 KM Plot
THCA rs12667060 chr7:32812096 A/G 9.25E-5 500 31.43 31.68 32.1 KM Plot